HL_8RPZ_027

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGUUGGCUUAGAAGCAGCCAUCA

Length

23 nucleotides

Bulged bases

8RPZ|1|A|U|1061, 8RPZ|1|A|A|1067, 8RPZ|1|A|A|1070, 8RPZ|1|A|G|1071, 8RPZ|1|A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|U|1058
8RPZ|1|A|G|1059
8RPZ|1|A|U|1060
8RPZ|1|A|U|1061
8RPZ|1|A|G|1062
8RPZ|1|A|G|1063
8RPZ|1|A|C|1064
8RPZ|1|A|U|1065
8RPZ|1|A|U|1066
8RPZ|1|A|A|1067
8RPZ|1|A|G|1068
8RPZ|1|A|A|1069
8RPZ|1|A|A|1070
8RPZ|1|A|G|1071
8RPZ|1|A|C|1072
8RPZ|1|A|A|1073
8RPZ|1|A|G|1074
8RPZ|1|A|C|1075
8RPZ|1|A|C|1076
8RPZ|1|A|A|1077
8RPZ|1|A|U|1078
8RPZ|1|A|C|1079
8RPZ|1|A|A|1080

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16