HL_8RPZ_034

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8RPZ|1|A|U|1396, 8RPZ|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1177

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|G|1389
8RPZ|1|A|U|1390
8RPZ|1|A|U|1391
8RPZ|1|A|A|1392
8RPZ|1|A|A|1393
8RPZ|1|A|U|1394
8RPZ|1|A|A|1395
8RPZ|1|A|U|1396
8RPZ|1|A|U|1397
8RPZ|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23

Chain x

Apidaecins type 88