HL_8RPZ_039
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGACACAG
- Length
- 8 nucleotides
- Bulged bases
- 8RPZ|1|A|A|1614, 8RPZ|1|A|A|1616, 8RPZ|1|A|A|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RPZ_039 not in the Motif Atlas
- Homologous match to HL_7RQB_040
- Geometric discrepancy: 0.0738
- The information below is about HL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64430.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8RPZ|1|A|C|1612
8RPZ|1|A|G|1613
8RPZ|1|A|A|1614
8RPZ|1|A|C|1615
8RPZ|1|A|A|1616
8RPZ|1|A|C|1617
8RPZ|1|A|A|1618
8RPZ|1|A|G|1619
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain S
- Large ribosomal subunit protein uL22
- Chain z
- Apidaecins type 88
Coloring options: