HL_8RPZ_059

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

8RPZ|1|A|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2314

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|A|2471
8RPZ|1|A|G|2472
8RPZ|1|A|U|2473
8RPZ|1|A|U|2474
8RPZ|1|A|C|2475
8RPZ|1|A|A|2476
8RPZ|1|A|U|2477
8RPZ|1|A|A|2478
8RPZ|1|A|U|2479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6