HL_8RPZ_067

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8RPZ|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0551

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RPZ|1|A|G|2819
8RPZ|1|A|A|2820
8RPZ|1|A|A|2821
8RPZ|1|A|G|2822
8RPZ|1|A|A|2823
8RPZ|1|A|C|2824
8RPZ|1|A|G|2825
8RPZ|1|A|A|2826
8RPZ|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17