HL_8RPZ_069

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

8RPZ|1|B|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_069 not in the Motif Atlas

Geometric match to HL_5J7L_203

Geometric discrepancy: 0.2088

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8RPZ|1|B|C|38
8RPZ|1|B|A|39
8RPZ|1|B|U|40
8RPZ|1|B|G|41
8RPZ|1|B|C|42
8RPZ|1|B|C|43
8RPZ|1|B|G|44

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL31

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

Large ribosomal subunit protein uL5

Chain O

Large ribosomal subunit protein uL18