HL_8RQ0_016
3D structure
- PDB id
- 8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 8RQ0|1|A|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RQ0_016 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0834
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8RQ0|1|A|U|566
8RQ0|1|A|U|567
8RQ0|1|A|U|568
8RQ0|1|A|U|569
8RQ0|1|A|G|570
8RQ0|1|A|U|571
8RQ0|1|A|A|572
8RQ0|1|A|U|573
8RQ0|1|A|A|574
8RQ0|1|A|A|575
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
Coloring options: