HL_8RQ0_021
3D structure
- PDB id
- 8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UGUCGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 8RQ0|1|A|C|747, 8RQ0|1|A|A|751, 8RQ0|1|A|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RQ0_021 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1063
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8RQ0|1|A|U|744
8RQ0|1|A|G|745
8RQ0|1|A|U|746
8RQ0|1|A|C|747
8RQ0|1|A|G|748
8RQ0|1|A|A|749
8RQ0|1|A|A|750
8RQ0|1|A|A|751
8RQ0|1|A|A|752
8RQ0|1|A|A|753
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain 2
- Large ribosomal subunit protein bL34
- Chain D
- Large ribosomal subunit protein uL3
- Chain S
- Large ribosomal subunit protein uL22
- Chain z
- Apidaecins type 88
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