HL_8RQ0_037

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8RQ0|1|A|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ0_037 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.4814

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8RQ0|1|A|C|1533
8RQ0|1|A|U|1534
8RQ0|1|A|A|1535
8RQ0|1|A|C|1536
8RQ0|1|A|G|1537
8RQ0|1|A|G|1538

Current chains

Chain A

23S ribosomal RNA

Nearby chains