HL_8RQ2_021

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

8RQ2|1|A|C|747, 8RQ2|1|A|A|751, 8RQ2|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ2_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1063

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8RQ2|1|A|U|744
8RQ2|1|A|G|745
8RQ2|1|A|U|746
8RQ2|1|A|C|747
8RQ2|1|A|G|748
8RQ2|1|A|A|749
8RQ2|1|A|A|750
8RQ2|1|A|A|751
8RQ2|1|A|A|752
8RQ2|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain 2

Large ribosomal subunit protein bL34

Chain D

Large ribosomal subunit protein uL3

Chain S

Large ribosomal subunit protein uL22

Chain z

Apidaecins type 88