HL_8RQ2_027

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGUUGGCUUAGAAGCAGCCAUCA

Length

23 nucleotides

Bulged bases

8RQ2|1|A|U|1061, 8RQ2|1|A|A|1067, 8RQ2|1|A|A|1070, 8RQ2|1|A|G|1071, 8RQ2|1|A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ2|1|A|U|1058
8RQ2|1|A|G|1059
8RQ2|1|A|U|1060
8RQ2|1|A|U|1061
8RQ2|1|A|G|1062
8RQ2|1|A|G|1063
8RQ2|1|A|C|1064
8RQ2|1|A|U|1065
8RQ2|1|A|U|1066
8RQ2|1|A|A|1067
8RQ2|1|A|G|1068
8RQ2|1|A|A|1069
8RQ2|1|A|A|1070
8RQ2|1|A|G|1071
8RQ2|1|A|C|1072
8RQ2|1|A|A|1073
8RQ2|1|A|G|1074
8RQ2|1|A|C|1075
8RQ2|1|A|C|1076
8RQ2|1|A|A|1077
8RQ2|1|A|U|1078
8RQ2|1|A|C|1079
8RQ2|1|A|A|1080

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16