HL_8RQ2_067

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8RQ2|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RQ2_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0551

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RQ2|1|A|G|2819
8RQ2|1|A|A|2820
8RQ2|1|A|A|2821
8RQ2|1|A|G|2822
8RQ2|1|A|A|2823
8RQ2|1|A|C|2824
8RQ2|1|A|G|2825
8RQ2|1|A|A|2826
8RQ2|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17