HL_8RRI_001
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AAACCAUU
- Length
- 8 nucleotides
- Bulged bases
- 8RRI|1|A|A|1724, 8RRI|1|A|A|1727
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RRI_001 not in the Motif Atlas
- Geometric match to HL_5J7L_139
- Geometric discrepancy: 0.1084
- The information below is about HL_5J7L_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8RRI|1|A|A|1722
8RRI|1|A|A|1723
8RRI|1|A|A|1724
8RRI|1|A|C|1725
8RRI|1|A|C|1726
8RRI|1|A|A|1727
8RRI|1|A|U|1728
8RRI|1|A|U|1729
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: