HL_8RRI_021

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

8RRI|1|A|A|2521, 8RRI|1|A|U|2522, 8RRI|1|A|C|2523, 8RRI|1|A|A|2527, 8RRI|1|A|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|A|A|2518
8RRI|1|A|G|2519
8RRI|1|A|C|2520
8RRI|1|A|A|2521
8RRI|1|A|U|2522
8RRI|1|A|C|2523
8RRI|1|A|A|2524
8RRI|1|A|C|2525
8RRI|1|A|C|2526
8RRI|1|A|A|2527
8RRI|1|A|G|2528
8RRI|1|A|U|2529
8RRI|1|A|A|2530
8RRI|1|A|U|2531
8RRI|1|A|U|2532

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial