HL_8RRI_038

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAGAACAG

Length

9 nucleotides

Bulged bases

8RRI|1|A|A|3217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_038 not in the Motif Atlas

Geometric match to HL_9DFE_065

Geometric discrepancy: 0.1131

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8RRI|1|A|C|3216
8RRI|1|A|A|3217
8RRI|1|A|A|3218
8RRI|1|A|G|3219
8RRI|1|A|A|3220
8RRI|1|A|A|3221
8RRI|1|A|C|3222
8RRI|1|A|A|3223
8RRI|1|A|G|3224

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain O

39S ribosomal protein L17, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial