HL_8RRI_053
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAUGAA
- Length
- 7 nucleotides
- Bulged bases
- 8RRI|1|AA|A|1283, 8RRI|1|AA|U|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RRI_053 not in the Motif Atlas
- Geometric match to HL_8G9Z_003
- Geometric discrepancy: 0.3632
- The information below is about HL_8G9Z_003
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37569.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8RRI|1|AA|U|1281
8RRI|1|AA|G|1282
8RRI|1|AA|A|1283
8RRI|1|AA|U|1284
8RRI|1|AA|G|1285
8RRI|1|AA|A|1286
8RRI|1|AA|A|1287
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AB
- 28S ribosomal protein S2, mitochondrial
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AE
- 28S ribosomal protein S6, mitochondrial
- Chain AS
- 28S ribosomal protein S23, mitochondrial
Coloring options: