HL_8RRI_062

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCAAUUC

Length

9 nucleotides

Bulged bases

8RRI|1|Ax|U|59, 8RRI|1|Ax|U|60

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RRI_062 not in the Motif Atlas

Homologous match to HL_4LCK_003

Geometric discrepancy: 0.3675

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8RRI|1|Ax|G|53
8RRI|1|Ax|U|54
8RRI|1|Ax|U|55
8RRI|1|Ax|C|56
8RRI|1|Ax|A|57
8RRI|1|Ax|A|58
8RRI|1|Ax|U|59
8RRI|1|Ax|U|60
8RRI|1|Ax|C|61

Current chains

Chain Ax

P/P-tRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1