HL_8RW1_006

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8RW1|1|2|U|157, 8RW1|1|2|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RW1_006 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.2047

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8RW1|1|2|G|153
8RW1|1|2|U|154
8RW1|1|2|A|155
8RW1|1|2|A|156
8RW1|1|2|U|157
8RW1|1|2|U|158
8RW1|1|2|C|159

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24