HL_8RW1_031

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8RW1|1|2|G|1242, 8RW1|1|2|G|1244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RW1_031 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2878

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8RW1|1|2|A|1237
8RW1|1|2|U|1238
8RW1|1|2|U|1239
8RW1|1|2|G|1240
8RW1|1|2|A|1241
8RW1|1|2|G|1242
8RW1|1|2|A|1243
8RW1|1|2|G|1244
8RW1|1|2|C|1245
8RW1|1|2|U|1246

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

KLLA0F07843p

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31