HL_8RW1_039

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAGAAGGGGGCAACUCCAUCUC

Length

22 nucleotides

Bulged bases

8RW1|1|2|A|1692, 8RW1|1|2|G|1693, 8RW1|1|2|G|1694, 8RW1|1|2|G|1695, 8RW1|1|2|G|1696, 8RW1|1|2|G|1697, 8RW1|1|2|C|1698, 8RW1|1|2|A|1699, 8RW1|1|2|A|1700, 8RW1|1|2|C|1701, 8RW1|1|2|U|1702, 8RW1|1|2|C|1703, 8RW1|1|2|C|1704, 8RW1|1|2|A|1705

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|G|1688
8RW1|1|2|A|1689
8RW1|1|2|G|1690
8RW1|1|2|A|1691
8RW1|1|2|A|1692
8RW1|1|2|G|1693
8RW1|1|2|G|1694
8RW1|1|2|G|1695
8RW1|1|2|G|1696
8RW1|1|2|G|1697
8RW1|1|2|C|1698
8RW1|1|2|A|1699
8RW1|1|2|A|1700
8RW1|1|2|C|1701
8RW1|1|2|U|1702
8RW1|1|2|C|1703
8RW1|1|2|C|1704
8RW1|1|2|A|1705
8RW1|1|2|U|1706
8RW1|1|2|C|1707
8RW1|1|2|U|1708
8RW1|1|2|C|1709

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6