HL_8S8E_019

3D structure

PDB id

8S8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

ACUUUAUGU

Length

9 nucleotides

Bulged bases

8S8E|1|2|U|662

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8E_019 not in the Motif Atlas

Geometric match to HL_6UFH_001

Geometric discrepancy: 0.3059

The information below is about HL_6UFH_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop

Motif group

HL_56046.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8S8E|1|2|A|660
8S8E|1|2|C|661
8S8E|1|2|U|662
8S8E|1|2|U|663
8S8E|1|2|U|664
8S8E|1|2|A|665
8S8E|1|2|U|666
8S8E|1|2|G|667
8S8E|1|2|U|668

Current chains

Chain 2

18S ribosomal RNA

Nearby chains