HL_8S8F_001
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- CAG(H2U)GGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8S8F|1|1|G|18, 8S8F|1|1|G|19, 8S8F|1|1|A|20, 8S8F|1|1|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8F_001 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.4489
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 21
Unit IDs
8S8F|1|1|C|13
8S8F|1|1|A|14
8S8F|1|1|G|15
8S8F|1|1|H2U|16
8S8F|1|1|G|18
8S8F|1|1|G|19
8S8F|1|1|A|20
8S8F|1|1|A|21
8S8F|1|1|G|22
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor eIF-1
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