HL_8S8F_024
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8F_024 not in the Motif Atlas
- Homologous match to HL_8C3A_212
- Geometric discrepancy: 0.094
- The information below is about HL_8C3A_212
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8S8F|1|2|C|936
8S8F|1|2|G|937
8S8F|1|2|A|938
8S8F|1|2|A|939
8S8F|1|2|A|940
8S8F|1|2|G|941
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain N
- KLLA0F18040p
- Chain a
- 40S ribosomal protein S26
Coloring options: