HL_8S8F_034

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8S8F|1|2|C|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8F_034 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.5221

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

8S8F|1|2|U|1394
8S8F|1|2|U|1395
8S8F|1|2|U|1396
8S8F|1|2|C|1397
8S8F|1|2|A|1398
8S8F|1|2|A|1399
8S8F|1|2|G|1400

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

KLLA0B01474p

Chain c

Small ribosomal subunit protein eS28