HL_8S8F_037

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8S8F|1|2|G|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8F_037 not in the Motif Atlas

Homologous match to HL_8P9A_223

Geometric discrepancy: 0.2645

The information below is about HL_8P9A_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8F|1|2|G|1592
8S8F|1|2|U|1593
8S8F|1|2|C|1594
8S8F|1|2|A|1595
8S8F|1|2|U|1596
8S8F|1|2|C|1597
8S8F|1|2|A|1598
8S8F|1|2|G|1599
8S8F|1|2|C|1600

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

KLLA0A07194p

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14