HL_8S8H_003
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAUCG(1MA)AAC
- Length
- 9 nucleotides
- Bulged bases
- 8S8H|1|1|A|59, 8S8H|1|1|A|60
- QA status
- Modified nucleotides: 1MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8H_003 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.2668
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
8S8H|1|1|G|53
8S8H|1|1|A|54
8S8H|1|1|U|55
8S8H|1|1|C|56
8S8H|1|1|G|57
8S8H|1|1|1MA|58
8S8H|1|1|A|59
8S8H|1|1|A|60
8S8H|1|1|C|61
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
Coloring options: