HL_8S8H_020

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCCUUGUGGG

Length

11 nucleotides

Bulged bases

8S8H|1|2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8H_020 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3027

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8S8H|1|2|C|714
8S8H|1|2|U|715
8S8H|1|2|C|716
8S8H|1|2|C|717
8S8H|1|2|U|718
8S8H|1|2|U|719
8S8H|1|2|G|720
8S8H|1|2|U|721
8S8H|1|2|G|722
8S8H|1|2|G|723
8S8H|1|2|G|724

Current chains

Chain 2

18S ribosomal RNA

Nearby chains