HL_8S8H_034

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8H_034 not in the Motif Atlas

Homologous match to HL_8P9A_219

Geometric discrepancy: 0.5612

The information below is about HL_8P9A_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84585.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8S8H|1|2|C|1358
8S8H|1|2|A|1359
8S8H|1|2|C|1360
8S8H|1|2|U|1361
8S8H|1|2|U|1362
8S8H|1|2|G|1363

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain Q

Small ribosomal subunit protein uS9

Chain T

KLLA0A07194p