HL_8S8H_038
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8S8H|1|2|C|1597, 8S8H|1|2|G|1599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8H_038 not in the Motif Atlas
- Homologous match to HL_8P9A_223
- Geometric discrepancy: 0.1705
- The information below is about HL_8P9A_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8S8H|1|2|G|1592
8S8H|1|2|U|1593
8S8H|1|2|C|1594
8S8H|1|2|A|1595
8S8H|1|2|U|1596
8S8H|1|2|C|1597
8S8H|1|2|A|1598
8S8H|1|2|G|1599
8S8H|1|2|C|1600
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- Small ribosomal subunit protein uS9
- Chain T
- KLLA0A07194p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
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