HL_8S8I_028
3D structure
- PDB id
- 8S8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGCAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8I_028 not in the Motif Atlas
- Homologous match to HL_8C3A_216
- Geometric discrepancy: 0.1463
- The information below is about HL_8C3A_216
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8S8I|1|2|C|1120
8S8I|1|2|G|1121
8S8I|1|2|C|1122
8S8I|1|2|A|1123
8S8I|1|2|A|1124
8S8I|1|2|G|1125
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein L41-A
Coloring options: