HL_8S8I_038

3D structure

PDB id

8S8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAGAAGGGGGCAACUCCAUCUC

Length

22 nucleotides

Bulged bases

8S8I|1|2|A|1692, 8S8I|1|2|G|1693, 8S8I|1|2|G|1694, 8S8I|1|2|G|1695, 8S8I|1|2|G|1696, 8S8I|1|2|G|1697, 8S8I|1|2|C|1698, 8S8I|1|2|A|1699, 8S8I|1|2|A|1700, 8S8I|1|2|C|1701, 8S8I|1|2|U|1702, 8S8I|1|2|C|1703, 8S8I|1|2|C|1704, 8S8I|1|2|A|1705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8I|1|2|G|1688
8S8I|1|2|A|1689
8S8I|1|2|G|1690
8S8I|1|2|A|1691
8S8I|1|2|A|1692
8S8I|1|2|G|1693
8S8I|1|2|G|1694
8S8I|1|2|G|1695
8S8I|1|2|G|1696
8S8I|1|2|G|1697
8S8I|1|2|C|1698
8S8I|1|2|A|1699
8S8I|1|2|A|1700
8S8I|1|2|C|1701
8S8I|1|2|U|1702
8S8I|1|2|C|1703
8S8I|1|2|C|1704
8S8I|1|2|A|1705
8S8I|1|2|U|1706
8S8I|1|2|C|1707
8S8I|1|2|U|1708
8S8I|1|2|C|1709

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6