HL_8S8J_026
3D structure
- PDB id
- 8S8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUGA(PSU)CAGAUAC(5MC)GU
- Length
- 15 nucleotides
- Bulged bases
- 8S8J|1|2|U|1003
- QA status
- Modified nucleotides: PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8S8J_026 not in the Motif Atlas
- Geometric match to HL_6ZDU_001
- Geometric discrepancy: 0.3828
- The information below is about HL_6ZDU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8S8J|1|2|A|994
8S8J|1|2|U|995
8S8J|1|2|G|996
8S8J|1|2|A|997
8S8J|1|2|PSU|998
8S8J|1|2|C|999
8S8J|1|2|A|1000
8S8J|1|2|G|1001
8S8J|1|2|A|1002
8S8J|1|2|U|1003
8S8J|1|2|A|1004
8S8J|1|2|C|1005
8S8J|1|2|5MC|1006
8S8J|1|2|G|1007
8S8J|1|2|U|1008
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor 5
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