HL_8S8K_007

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

8S8K|1|2|U|191, 8S8K|1|2|U|193

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_007 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5545

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

8S8K|1|2|C|189
8S8K|1|2|C|190
8S8K|1|2|U|191
8S8K|1|2|U|192
8S8K|1|2|U|193
8S8K|1|2|G|194

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8