HL_8S8K_015

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8S8K|1|2|A|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_015 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.3361

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8S8K|1|2|U|449
8S8K|1|2|A|450
8S8K|1|2|A|451
8S8K|1|2|U|452
8S8K|1|2|U|453
8S8K|1|2|C|454
8S8K|1|2|A|455

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain Y

40S ribosomal protein S24