HL_8S8K_036

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8S8K_036 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.2207

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8S8K|1|2|C|1499
8S8K|1|2|G|1500
8S8K|1|2|A|1501
8S8K|1|2|G|1502
8S8K|1|2|A|1503
8S8K|1|2|G|1504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p