HL_8SCB_011

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8SCB|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3715

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8SCB|1|5|U|204
8SCB|1|5|C|205
8SCB|1|5|U|206
8SCB|1|5|G|207
8SCB|1|5|A|208
8SCB|1|5|U|209
8SCB|1|5|C|210
8SCB|1|5|G|211

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain Y

uL24

Chain e

eL32