HL_8SCB_017

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_017 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2516

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8SCB|1|5|U|392
8SCB|1|5|U|393
8SCB|1|5|G|394
8SCB|1|5|A|395
8SCB|1|5|A|396
8SCB|1|5|G|397
8SCB|1|5|A2M|398
8SCB|1|5|G|399

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain P

uL22