HL_8SCB_021
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 8SCB|1|5|C|1325
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8SCB_021 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1029
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
8SCB|1|5|C|1315
8SCB|1|5|OMG|1316
8SCB|1|5|U|1317
8SCB|1|5|C|1318
8SCB|1|5|U|1319
8SCB|1|5|U|1320
8SCB|1|5|G|1321
8SCB|1|5|1MA|1322
8SCB|1|5|A|1323
8SCB|1|5|A|1324
8SCB|1|5|C|1325
8SCB|1|5|A2M|1326
8SCB|1|5|C|1327
8SCB|1|5|G|1328
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain a
- 60S ribosomal protein L27a
- Chain e
- eL32
Coloring options: