HL_8SCB_038

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_038 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1383

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8SCB|1|5|A|2376
8SCB|1|5|C|2377
8SCB|1|5|G|2378
8SCB|1|5|A|2379
8SCB|1|5|G|2380
8SCB|1|5|A|2381
8SCB|1|5|A|2382
8SCB|1|5|C|2383
8SCB|1|5|U|2384

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31