HL_8SCB_039

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8SCB|1|5|G|2421, 8SCB|1|5|A|2423, 8SCB|1|5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_039 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1477

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8SCB|1|5|A|2420
8SCB|1|5|G|2421
8SCB|1|5|OMC|2422
8SCB|1|5|A|2423
8SCB|1|5|OMG|2424
8SCB|1|5|U|2425
8SCB|1|5|U|2426

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain l

eL39