HL_8SCB_042

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8SCB|1|5|U|2530, 8SCB|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_042 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0711

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8SCB|1|5|G|2523
8SCB|1|5|U|2524
8SCB|1|5|U|2525
8SCB|1|5|C|2526
8SCB|1|5|A|2527
8SCB|1|5|G|2528
8SCB|1|5|A|2529
8SCB|1|5|U|2530
8SCB|1|5|C|2531
8SCB|1|5|C|2532

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain X

eL23

Chain g

60S ribosomal protein L34