HL_8SCB_044

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_044 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0684

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8SCB|1|5|G|2578
8SCB|1|5|G|2579
8SCB|1|5|U|2580
8SCB|1|5|A|2581
8SCB|1|5|A|2582
8SCB|1|5|C|2583

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34