HL_8SCB_051

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

8SCB|1|5|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_051 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.0661

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8SCB|1|5|C|2872
8SCB|1|5|U|2873
8SCB|1|5|U|2874
8SCB|1|5|C|2875
8SCB|1|5|OMG|2876
8SCB|1|5|G|2877

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43