HL_8SCB_056

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

A(A2M)GAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_056 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.235

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8SCB|1|5|A|3723
8SCB|1|5|A2M|3724
8SCB|1|5|G|3725
8SCB|1|5|A|3726
8SCB|1|5|A|3727
8SCB|1|5|A|3728
8SCB|1|5|U|3729
8SCB|1|5|U|3730

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

eL42