HL_8SCB_072

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_072 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.2982

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8SCB|1|5|U|4497
8SCB|1|5|OMU|4498
8SCB|1|5|OMG|4499
8SCB|1|5|PSU|4500
8SCB|1|5|U|4501
8SCB|1|5|C|4502
8SCB|1|5|A|4503

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain ii

Eukaryotic peptide chain release factor subunit 1