HL_8SCB_076

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8SCB|1|5|G|4694, 8SCB|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0762

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8SCB|1|5|C|4688
8SCB|1|5|U|4689
8SCB|1|5|G|4690
8SCB|1|5|A|4691
8SCB|1|5|A|4692
8SCB|1|5|C|4693
8SCB|1|5|G|4694
8SCB|1|5|C|4695
8SCB|1|5|C|4696
8SCB|1|5|U|4697
8SCB|1|5|C|4698
8SCB|1|5|U|4699
8SCB|1|5|A|4700
8SCB|1|5|A|4701
8SCB|1|5|G|4702

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1