HL_8SCB_086

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

8SCB|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_086 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2536

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8SCB|1|8|G|121
8SCB|1|8|G|122
8SCB|1|8|U|123
8SCB|1|8|U|124
8SCB|1|8|C|125
8SCB|1|8|C|126
8SCB|1|8|U|127
8SCB|1|8|C|128
8SCB|1|8|C|129

Current chains

Chain 8

5.8S_rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

eL23