HL_8SCB_088

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

8SCB|1|9|G|75, 8SCB|1|9|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_088 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3662

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8SCB|1|9|C|69
8SCB|1|9|G|70
8SCB|1|9|G|71
8SCB|1|9|C|72
8SCB|1|9|C|73
8SCB|1|9|G|74
8SCB|1|9|G|75
8SCB|1|9|U|76
8SCB|1|9|A|77
8SCB|1|9|C|78
8SCB|1|9|A|79
8SCB|1|9|G|80

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6