HL_8SCB_089

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8SCB|1|9|A|158, 8SCB|1|9|U|160, 8SCB|1|9|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_089 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.189

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8SCB|1|9|G|156
8SCB|1|9|U|157
8SCB|1|9|A|158
8SCB|1|9|A2M|159
8SCB|1|9|U|160
8SCB|1|9|U|161
8SCB|1|9|C|162

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6

Chain YY

40S ribosomal protein S24

Chain jj

ATP binding cassette subfamily E member 1