HL_8SCB_097

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8SCB|1|9|C|502, 8SCB|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8SCB_097 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1841

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8SCB|1|9|C|498
8SCB|1|9|G|499
8SCB|1|9|A|500
8SCB|1|9|C|501
8SCB|1|9|C|502
8SCB|1|9|C|503
8SCB|1|9|G|504

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain YY

40S ribosomal protein S24